Good day,
I have developed a Flow (#1) for a SharePoint that needs to archive files weekly, from one location filled with user folders and files, to a different read-only "archive" location in the same SharePoint library. This flow saves hours a week, and is critical to a certain department's SharePoint library processes. At the start of the year, I resolved the issue of the Flow not seeing all the files within these folders via the Top Count option, setting it to 999999.
Some time last month, this seems to have shifted. No changes were made to the Flow over the year, and it has worked flawlessly since I patched the Top Count issue. However, slowly over the weeks in September, more files were missed every run. At first it was a handful, then half the targeted directory... Now, I am back to not being able to get any files in this folder of the library. Has anything changed with Flow/Power Automate (that I am not seeing) to have caused this?
The "Get Files" output is seemingly limited to 160 total items, all folders and documents that don't match the following Apply to Each Condition, now. The Condition makes sure it is at the location PATH1/username/PATH2/, doing Contains Path on Path1/ and Path2/, is of a proper document type, and that the folder path does NOT contain OneDrive/ (as I had a user somehow drag-and-drop(?) their entire OneDrive folder into their SharePoint folder...). See picture below.
I have a simpler Flow (#2) that does the same for another process (only .xlsx docs), however even that fails. Hence, my believing the Condition (that has worked fine for months) is not the issue at hand. (Still, pictured below.)
These are my first-ever Flows, so I am open to suggestions. Has anything changed since the start of September? I know the rebranding has been running, and there have been service disruptions, but this issue has been worsening over the past month consistently at every scheduled weekly run.
Condition for Flow #1:

Condition for Flow #2:

Get Files (properties only) screenshot:
