My Microsoft account has a license from 2 organization, and I can use Power Apps portal by using switch directories or switch organisation, but I am not getting this option in the Power Automate portal.
This is correct, but you can simply use the Power Apps side to do your flows in, they are essentially the same. I will say Copy Paste can be impacted, but otherwise just build your solutions, add your flows etc in the Power apps side, so you can.,
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