It seems like since Power FX enabled flows don't have much capabilities for datatables yet you might want to try using Run .NET script:

Assuming the data table you have has column named "Column1". Now that also removes any row that has empty value in Column1 so you might have to change that a bit if you want to keep rows that has Column1 empty but maybe has values in other columns.
press Edit button next to Script parameters:

Input value should be your data table that you are trying to filter. Out variable can be the same or what ever new variable you want.
Or just copy paste this to your PAD flow(and edit script parameters if the variables are different named than DataFromWindow):
Scripting.RunDotNetScript Language: System.DotNetActionLanguageType.CSharp Script: $fx'DT1 = DT1.DefaultView.ToTable();
DT1.DefaultView.RowFilter = "Column1 <> \'\' OR Column1 IS NOT NULL";
DT1.DefaultView.RowFilter = "TRIM(ISNULL(Column1, \'\')) <> \'\'";
DT1 = DT1.DefaultView.ToTable();' @'name:DT1': $fx'=DataFromWindow' @'type:DT1': $fx'Datatable' @'direction:DT1': $fx'InOut' => DataFromWindow